Repository revision

Revision: 2:fdfb35745104

Repository 'combine_metaphlan2_humann2'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bebatut/combine_metaphlan2_humann2

Combine MetaPhlAn2 and HUMAnN2 outputs tool metadata

Miscellaneous

Name: Combine MetaPhlAn2 and HUMAnN2 outputs

Description: to relate genus/species abundances and gene families/pathways abundances

Id: combine_metaphlan2_humann2

Guid: toolshed.g2.bx.psu.edu/repos/bebatut/combine_metaphlan2_humann2/combine_metaphlan2_humann2/0.2.0

Version: 0.2.0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bebatut/combine_metaphlan2_humann2/combine_metaphlan2_humann2/0.2.0 (this tool)

toolshed.g2.bx.psu.edu/repos/bebatut/combine_metaphlan2_humann2/combine_metaphlan2_humann2/0.1.0

combine_metaphlan2_humann2

Requirements (dependencies defined in the <requirements> tag set)

No requirements defined

Functional tests

name

inputs

outputs

required files

Test-1

metaphlan2_file: metaphlan2_input.txt
humann2_file: humann2_gene_families_input.tabular
type: gene_families

name: value

metaphlan2_input.txt
humann2_gene_families_input.tabular
value

Test-2

metaphlan2_file: metaphlan2_input.txt
humann2_file: humann2_pathways_input.tabular
type: pathways

name: value

metaphlan2_input.txt
humann2_pathways_input.tabular
value