| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_heatmap_bin/mothur_heatmap_bin/1.39.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_heatmap_bin/mothur_heatmap_bin/1.36.1.0 |
| mothur_heatmap_bin |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.39.5 | package |
| Additional information about this tool |
set -o pipefail; export TERM=vt100;
## create symlinks to input datasets
ln -s '$input.otu' input_otu.dat &&
echo 'heatmap.bin(
#if $input.otu.is_of_type("mothur.rabund"):
rabund=input_otu.dat,
#elif $input.otu.is_of_type("mothur.sabund"):
sabund=input_otu.dat,
#elif $input.otu.is_of_type("mothur.list"):
list=input_otu.dat,
#elif $input.otu.is_of_type("mothur.relabund"):
relabund=input_otu.dat,
#elif $input.otu.is_of_type("mothur.shared"):
shared=input_otu.dat,
#end if
#if $input.has_groups == 'yes' and $input.groups:
groups=${ str($input.groups).replace(",","-") },
#end if
#if $input.label:
label=${ str($input.label).replace(",","-") },
#end if
scale=$scale,
sorted=$sorted,
numotu=$numotu,
fontsize=$fontsize
)'
| sed 's/ //g' ## mothur trips over whitespace
| mothur
| tee mothur.out.log
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input|otu: amazon.an.list input|has_groups: no savelog: True |
name: value |
amazon.an.list value |
| Test-2 |
input|otu: amazon.an.relabund input|groups: forest input|label: 0.26 input|has_groups: yes savelog: True |
name: value |
amazon.an.relabund value |
| Test-3 |
input|otu: amazon.an.shared input|groups: ['forest', 'pasture'] input|label: ['0.03', '0.26', '0.55'] input|has_groups: yes scale: linear sorted: none fontsize: 100 savelog: True |
name: value |
amazon.an.shared value |