Repository revision
5:04c15826a0b8

Repository 'dada2_learnerrors'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors

dada2: learnErrors tool metadata
Miscellaneous
Learn Error rates
dada2_learnErrors
toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.20+galaxy0
1.20+galaxy0
echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.20+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.20+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.18+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.16+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.14+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.12+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.12+galaxy0
dada2_learnErrors
Requirements (dependencies defined in the <requirements> tag set)
name version type
bioconductor-dada2 1.20 package
Functional tests
name inputs outputs required files
Test-1 fls: ['filterAndTrim_F3D0_R1.fq.gz', 'filterAndTrim_F3D141_R1.fq.gz']
name: value
name: value
filterAndTrim_F3D0_R1.fq.gz
filterAndTrim_F3D141_R1.fq.gz
value
Test-2 fls: ['filterAndTrim_F3D0_R1.fq.gz', 'filterAndTrim_F3D141_R1.fq.gz']
nbases: 6
advanced|errfoo: noqualErrfun
advanced|randomize: True
advanced|maxconsist: 5
advanced|omegac: 1e-10
plotopt|obs: False
plotopt|err_out: False
plotopt|err_in: True
plotopt|nominalQ: False
name: value
name: value
filterAndTrim_F3D0_R1.fq.gz
filterAndTrim_F3D141_R1.fq.gz
value