Revision: 9:5fe3edf19b9c

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors

Miscellaneous

Name: dada2: learnErrors

Description: Learn Error rates

Id: dada2_learnErrors

Guid: toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.30.0+galaxy0

Version: 1.30.0+galaxy0

Version command string: echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.34.0+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.30.0+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.28+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.28+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.20+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.20+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.18+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.16+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.14+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.12+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/dada2_learnerrors/dada2_learnErrors/1.12+galaxy0

dada2_learnErrors

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name	version	type
bioconductor-dada2	1.30.0	package

Functional tests

name	inputs	outputs	required files
Test-1	fls: ['filterAndTrim_F3D0_R1.fq.gz', 'filterAndTrim_F3D141_R1.fq.gz']	name: value name: value	filterAndTrim_F3D0_R1.fq.gz filterAndTrim_F3D141_R1.fq.gz value
Test-2	fls: ['filterAndTrim_F3D0_R1.fq.gz', 'filterAndTrim_F3D141_R1.fq.gz'] nbases: 6 advanced|errfoo: noqualErrfun advanced|randomize: True advanced|maxconsist: 5 advanced|omegac: 1e-10 plotopt|obs: False plotopt|err_out: False plotopt|err_in: True plotopt|nominalQ: False	name: value name: value	filterAndTrim_F3D0_R1.fq.gz filterAndTrim_F3D141_R1.fq.gz value