Galaxy |

Stacks: sstacks tool metadata

Miscellaneous

Name: Stacks: sstacks

Description: match stacks to a catalog

Id: stacks_sstacks

Guid: toolshed.g2.bx.psu.edu/repos/iuc/stacks_sstacks/stacks_sstacks/1.46.0

Version: 1.46.0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/stacks_sstacks/stacks_sstacks/1.46.1

toolshed.g2.bx.psu.edu/repos/iuc/stacks_sstacks/stacks_sstacks/1.46.0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/stacks_sstacks/stacks_sstacks/1.42.0

toolshed.g2.bx.psu.edu/repos/iuc/stacks_sstacks/stacks_sstacks/1.40.1

toolshed.g2.bx.psu.edu/repos/iuc/stacks_sstacks/stacks_sstacks/1.40.0

stacks_sstacks

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

stacks

1.46

package

velvet

1.2.10

package

stacks_summary

1.1

package

Functional tests

name

inputs

outputs

required files

Test-1

input_cat: list collection
input_tags: list collection

name: value
name: value

genotypes/batch_1.catalog.alleles.tsv
genotypes/batch_1.catalog.snps.tsv
genotypes/batch_1.catalog.tags.tsv
genotypes/PopA_01.alleles.tsv
genotypes/PopA_01.matches.tsv
genotypes/PopA_01.snps.tsv
genotypes/PopA_01.tags.tsv
genotypes/PopA_02.alleles.tsv
genotypes/PopA_02.matches.tsv
genotypes/PopA_02.snps.tsv
genotypes/PopA_02.tags.tsv
value

Test-2

input_cat: list collection
input_tags: list collection
check_haplo: True
gapped: True

name: value
name: value

Test-3

input_cat: list collection
input_tags: list collection
popmap: denovo_map/popmap_cstacks.tsv

name: value
name: value