| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/scanpy_remove_confounders/scanpy_remove_confounders/1.4.4.post1+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/scanpy_remove_confounders/scanpy_remove_confounders/1.4.4.post1+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/scanpy_remove_confounders/scanpy_remove_confounders/1.4.4.post1 |
| toolshed.g2.bx.psu.edu/repos/iuc/scanpy_remove_confounders/scanpy_remove_confounders/1.4.4 |
| toolshed.g2.bx.psu.edu/repos/iuc/scanpy_remove_confounders/scanpy_remove_confounders/1.4 |
| scanpy_remove_confounders |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| scanpy | 1.4.4.post1 | package |
| loompy | 2.0.17 | package |
| h5py | 2.9.0 | package |
| leidenalg | 0.7.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
adata: krumsiek11.h5ad method|keys: cell_type method|method: pp.regress_out |
attributes: name |
krumsiek11.h5ad name |
| Test-2 |
method|key: blobs adata: blobs.h5ad method|method: pp.combat |
attributes: name |
blobs.h5ad name |