| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/presto_pairseq/presto_pairseq/0.6.2+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/presto_pairseq/presto_pairseq/0.6.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/presto_pairseq/presto_pairseq/0.5.4 |
| presto_pairseq |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| presto | 0.6.2 | package |
| Additional information about this tool |
ln -s '$r1_in' r1.fastq &&
ln -s '$r2_in' r2.fastq &&
PairSeq.py
-1 r1.fastq
-2 r2.fastq
--coord $coord
#if $r1_annotations
--1f $r1_annotations
#end if
#if $r2_annotations
--2f $r2_annotations
#end if
$failed
--outdir=.
--outname=tmp
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
r1_in: presto_pairseq_test1_r1_in.fastq r2_in: presto_pairseq_test1_r2_in.fastq r2_annotations: BARCODE coord: illumina |
name: value name: value |
presto_pairseq_test1_r1_in.fastq presto_pairseq_test1_r2_in.fastq value |
| Test-2 |
r1_in: presto_pairseq_test1_r1_in.fastq r2_in: presto_pairseq_test1_r2_in.fastq r2_annotations: BARCODE coord: illumina failed: True |
name: value name: value name: value name: value |
presto_pairseq_test1_r1_in.fastq presto_pairseq_test1_r2_in.fastq value |