| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/tomnl/mzml2isa/mzml2isa/1.1.1+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/tomnl/mzml2isa/mzml2isa/1.1.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/tomnl/mzml2isa/mzml2isa/0.1.0 |
| mzml2isa |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| zip | not provided | package |
| mzml2isa | 1.1.1 | package |
| Additional information about this tool |
#if $input.format == "data_collection"
mkdir "temp"
&&
cd "temp"
&&
#for $fn in $input.source
#if str( $fn ).endswith(".dat")
ln -s '$fn' '$fn.name'
&&
#end if
#end for
cd ..
&&
#end if
#if $metadata
ln -s '$metadata' 'metadata.json' &&
#end if
mzml2isa -s $name_of_study -o . -i
#if $input.format == "zip_file"
"zip://$input.source"
#else if $input.format == "tar_file"
"tar://$input.source"
#else if $input.format == "data_collection"
"temp"
#end if
#if $metadata
-m "metadata.json"
#end if
&& zip isa.zip i_* a_* s_* && mv isa.zip "$ISA_zip";
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
name_of_study: test input|source: metabolomics_study.zip input|format: zip_file |
name: value |
metabolomics_study.zip value |
| Test-2 |
name_of_study: test input|source: list collection input|format: data_collection |
name: value |
1_samp.mzML 2_samp.mzML 3_samp.mzML 4_samp.mzML 5_samp.mzML 6_samp.mzML value |