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Repository revision

Revision: 3:88d274322340

Repository 'krakentools_kreport2krona'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/krakentools_kreport2krona

Krakentools: Convert kraken report file tool metadata

Miscellaneous

Name: Krakentools: Convert kraken report file

Description: to krona text file

Id: krakentools_kreport2krona

Guid: toolshed.g2.bx.psu.edu/repos/iuc/krakentools_kreport2krona/krakentools_kreport2krona/1.2+galaxy0

Version: 1.2+galaxy0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/krakentools_kreport2krona/krakentools_kreport2krona/1.2+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/krakentools_kreport2krona/krakentools_kreport2krona/1.2+galaxy0 (this tool)

krakentools_kreport2krona

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

krakentools

1.2

package

Additional information about this tool

Command:

kreport2krona.py 
    --report '$report' 
    --output '$output' 
    $intermediate_ranks

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

report: sample.tabular

name: value

sample.tabular
value

Test-2

report: sample.tabular
intermediate_ranks: True

name: value

sample.tabular
value