Repository revision
17:d03af1c7002c

Repository 'tbprofiler'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler

TB-Profiler Profile tool metadata
Miscellaneous
Infer strain types and drug resistance markers from sequences
tb_profiler_profile
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/4.4.1+galaxy0
4.4.1+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/6.2.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/4.4.1+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/4.4.0+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/4.1.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/3.0.8+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/3.0.7+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/3.0.7+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/3.0.6+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/3.0.4+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/2.8.14+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/2.8.4+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/2.8.4+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/2.8.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/2.6.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/2.6+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/2.4
toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler/tb_profiler_profile/2.1.0
tb_profiler_profile
Requirements (dependencies defined in the <requirements> tag set)
name version type
tb-profiler 4.4.1 package
Functional tests
name inputs outputs required files
Test-1 platform: illumina
fastq_or_bam|fastq: rif_resistant.fastq.gz
fastq_or_bam|input_select: single_fastq
output_format: txt
advanced|options: no
name: value
rif_resistant.fastq.gz
value
Test-2 platform: illumina
fastq_or_bam|bam_input: rif_resistant.bam
fastq_or_bam|input_select: bam
output_format: txt
advanced|options: no
name: value
rif_resistant.bam
value
Test-3 platform: illumina
fastq_or_bam|fastq: rif_resistant.fastq.gz
fastq_or_bam|input_select: single_fastq
output_format: txt
advanced|min_allele_freq: 0.25
advanced|min_allele_freq_reporting: 0.33
advanced|options: yes
name: value
rif_resistant.fastq.gz
value