Repository revision
7:b63684e40386

Repository 'viennarna_rnaalifold'
hg clone https://toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnaalifold

RNAalifold tool metadata
Miscellaneous
RNAalifold
Calculate minimum free energy secondary structures and partition function on a multiple alignment file
viennarna_rnaalifold
toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnaalifold/viennarna_rnaalifold/2.2.10.1
2.2.10.1
RNAalifold --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnaalifold/viennarna_rnaalifold/2.2.10.1 (this tool)
toolshed.g2.bx.psu.edu/repos/rnateam/viennarna_rnaalifold/viennarna_rnaalifold/2.2.10.0
viennarna_rnaalifold
Requirements (dependencies defined in the <requirements> tag set)
name version type
viennarna 2.2.10 package
Functional tests
name inputs outputs required files
Test-1 input: rnaalifold_input1.clustal
output: rnaalifold_result1.txt
rnaalifold_input1.clustal
rnaalifold_result1.txt
Test-2 input: rnaalifold_input1.fa
output: rnaalifold_resultfa.txt
rnaalifold_input1.fa
rnaalifold_resultfa.txt
Test-3 input: rnaalifold_input1.stk
output: rnaalifold_resultstk.txt
rnaalifold_input1.stk
rnaalifold_resultstk.txt
Test-4 input: rnaalifold_input1.clustal
algorithm_options|measelect|mea: yes
output: rnaalifold_result_MEA.txt
rnaalifold_input1.clustal
rnaalifold_result_MEA.txt