| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mapalignertreeguided/MapAlignerTreeGuided/2.8+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mapalignertreeguided/MapAlignerTreeGuided/2.6+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_mapalignertreeguided/MapAlignerTreeGuided/2.5+galaxy0 |
| MapAlignerTreeGuided |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.6 | package |
| openms-thirdparty | 2.6 | package |
| blast | 2.9.0 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: ['MapAlignerTreeGuided_1_input1.featureXML', 'MapAlignerTreeGuided_1_input2.featureXML', 'MapAlignerTreeGuided_1_input3.featureXML'] algorithm|model_type: b_spline algorithm|model|type: b_spline algorithm|model|linear|symmetric_regression: False algorithm|model|linear|x_weight: algorithm|model|linear|y_weight: algorithm|model|linear|x_datum_min: 1e-15 algorithm|model|linear|x_datum_max: 1000000000000000.0 algorithm|model|linear|y_datum_min: 1e-15 algorithm|model|linear|y_datum_max: 1000000000000000.0 algorithm|model|b_spline|wavelength: 0.0 algorithm|model|b_spline|num_nodes: 5 algorithm|model|b_spline|extrapolate: linear algorithm|model|b_spline|boundary_condition: 2 algorithm|model|lowess|span: 0.666666666666667 algorithm|model|lowess|num_iterations: 3 algorithm|model|lowess|delta: -1.0 algorithm|model|lowess|interpolation_type: cspline algorithm|model|lowess|extrapolation_type: four-point-linear algorithm|model|interpolated|interpolation_type: cspline algorithm|model|interpolated|extrapolation_type: two-point-linear algorithm|align_algorithm|score_cutoff: False algorithm|align_algorithm|min_score: 0.05 algorithm|align_algorithm|min_run_occur: 2 algorithm|align_algorithm|max_rt_shift: 0.5 algorithm|align_algorithm|use_unassigned_peptides: True algorithm|align_algorithm|use_feature_rt: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG'] |
name: value |
MapAlignerTreeGuided_1_input1.featureXML MapAlignerTreeGuided_1_input2.featureXML MapAlignerTreeGuided_1_input3.featureXML value |
| Test-2 |
in: ['MapAlignerTreeGuided_1_input1.featureXML', 'MapAlignerTreeGuided_1_input2.featureXML', 'MapAlignerTreeGuided_1_input3.featureXML'] algorithm|model_type: b_spline algorithm|model|type: b_spline algorithm|model|linear|symmetric_regression: False algorithm|model|linear|x_weight: algorithm|model|linear|y_weight: algorithm|model|linear|x_datum_min: 1e-15 algorithm|model|linear|x_datum_max: 1000000000000000.0 algorithm|model|linear|y_datum_min: 1e-15 algorithm|model|linear|y_datum_max: 1000000000000000.0 algorithm|model|b_spline|wavelength: 0.0 algorithm|model|b_spline|num_nodes: 5 algorithm|model|b_spline|extrapolate: linear algorithm|model|b_spline|boundary_condition: 2 algorithm|model|lowess|span: 0.666666666666667 algorithm|model|lowess|num_iterations: 3 algorithm|model|lowess|delta: -1.0 algorithm|model|lowess|interpolation_type: cspline algorithm|model|lowess|extrapolation_type: four-point-linear algorithm|model|interpolated|interpolation_type: cspline algorithm|model|interpolated|extrapolation_type: two-point-linear algorithm|align_algorithm|score_cutoff: False algorithm|align_algorithm|min_score: 0.05 algorithm|align_algorithm|min_run_occur: 2 algorithm|align_algorithm|max_rt_shift: 0.5 algorithm|align_algorithm|use_unassigned_peptides: True algorithm|align_algorithm|use_feature_rt: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'trafo_out_FLAG'] |
name: value |
MapAlignerTreeGuided_1_input1.featureXML MapAlignerTreeGuided_1_input2.featureXML MapAlignerTreeGuided_1_input3.featureXML value |
| Test-3 |
in: ['MapAlignerTreeGuided_1_input1.featureXML', 'MapAlignerTreeGuided_1_input2.featureXML', 'MapAlignerTreeGuided_1_input3.featureXML'] algorithm|model_type: b_spline algorithm|model|type: b_spline algorithm|model|linear|symmetric_regression: False algorithm|model|linear|x_weight: algorithm|model|linear|y_weight: algorithm|model|linear|x_datum_min: 1e-15 algorithm|model|linear|x_datum_max: 1000000000000000.0 algorithm|model|linear|y_datum_min: 1e-15 algorithm|model|linear|y_datum_max: 1000000000000000.0 algorithm|model|b_spline|wavelength: 0.0 algorithm|model|b_spline|num_nodes: 5 algorithm|model|b_spline|extrapolate: linear algorithm|model|b_spline|boundary_condition: 2 algorithm|model|lowess|span: 0.666666666666667 algorithm|model|lowess|num_iterations: 3 algorithm|model|lowess|delta: -1.0 algorithm|model|lowess|interpolation_type: cspline algorithm|model|lowess|extrapolation_type: four-point-linear algorithm|model|interpolated|interpolation_type: cspline algorithm|model|interpolated|extrapolation_type: two-point-linear algorithm|align_algorithm|score_cutoff: False algorithm|align_algorithm|min_score: 0.05 algorithm|align_algorithm|min_run_occur: 2 algorithm|align_algorithm|max_rt_shift: 0.5 algorithm|align_algorithm|use_unassigned_peptides: True algorithm|align_algorithm|use_feature_rt: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'out_FLAG'] |
name: value |
MapAlignerTreeGuided_1_input1.featureXML MapAlignerTreeGuided_1_input2.featureXML MapAlignerTreeGuided_1_input3.featureXML value |