| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schicplotconsensusmatrices/schicexplorer_schicplotconsensusmatrices/4.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schicplotconsensusmatrices/schicexplorer_schicplotconsensusmatrices/4.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schicplotconsensusmatrices/schicexplorer_schicplotconsensusmatrices/1.0 |
| schicexplorer_schicplotconsensusmatrices |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| schicexplorer | 4 | package |
| Additional information about this tool |
scHicPlotConsensusMatrices
--matrix $matrix_scooler
#if $chromosomes:
#set $chromosome = ' '.join([ '\'%s\'' % $chrom for $chrom in str($chromosomes).split(' ') ])
--chromosomes $chromosome
#end if
#if $colormap:
--colorMap $colormap
#end if
#if $dpi:
--dpi $dpi
#end if
--outFileName plot.$image_file_format
--threads \${GALAXY_SLOTS:-4}
&& mv plot.$image_file_format plot
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
matrix_scooler: scHicConsensusMatrices/consensus_matrix.scool dpi: 300 image_file_format: png |
name: value |
scHicConsensusMatrices/consensus_matrix.scool value |
| Test-2 |
matrix_scooler: scHicConsensusMatrices/consensus_matrix.scool chromosomes: chr1 chr2 dpi: 300 image_file_format: png |
name: value |
scHicConsensusMatrices/consensus_matrix.scool value |