| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_dedup/umi_tools_dedup/1.1.2+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_dedup/umi_tools_dedup/1.1.2+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_dedup/umi_tools_dedup/1.1.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_dedup/umi_tools_dedup/0.5.5+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_dedup/umi_tools_dedup/0.5.5.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_dedup/umi_tools_dedup/0.5.3.0 |
| umi_tools_dedup |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| umi_tools | 1.1.2 | package |
| samtools | 1.12 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: group_in1.sam bc|extract_umi_method: read_id umi|method: unique advanced|random_seed: 0 |
name: value |
group_in1.sam value |
| Test-2 |
input: group_in2.sam bc|extract_umi_method: read_id umi|method: unique sambam|paired: True advanced|random_seed: 0 |
name: value |
group_in2.sam value |
| Test-3 |
input: group_in3.bam bc|extract_umi_method: read_id umi|method: unique advanced|random_seed: 0 |
name: value |
group_in3.bam value |
| Test-4 |
input: group_in4.bam bc|umi_tag: BX bc|extract_umi_method: tag umi|method: unique advanced|random_seed: 0 |
name: value |
group_in4.bam value |
| Test-5 |
input: group_in5.bam bc|extract_umi_method: read_id umi|method: cluster advanced|random_seed: 0 |
name: value |
group_in5.bam value |
| Test-6 |
input: group_in6.bam bc|extract_umi_method: read_id umi|method: directional advanced|random_seed: 0 |
name: value |
group_in6.bam value |
| Test-7 |
input: group_in6.bam output_stats_bool: True bc|extract_umi_method: read_id umi|method: directional advanced|random_seed: 0 |
name: value |
group_in6.bam value |