| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_dedup/umi_tools_dedup/0.5.5.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_dedup/umi_tools_dedup/0.5.3.0 (this tool) |
| umi_tools_dedup |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| umi_tools | 0.5.3 | package |
| samtools | 1.6 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: group_in1.sam extract_umi_method: read_id method: unique |
attributes: name |
group_in1.sam name |
| Test-2 |
input: group_in2.bam method: unique extract_umi_method: read_id paired: True |
attributes: name |
group_in2.bam name |
| Test-3 |
input: group_in3.bam extract_umi_method: read_id method: unique |
attributes: name |
group_in3.bam name |
| Test-4 |
umi_tag: BX input: group_in4.bam method: unique extract_umi_method: tag |
attributes: name |
group_in4.bam name |
| Test-5 |
umi_tag: BX input: group_in5.bam method: cluster extract_umi_method: read_id |
attributes: name |
group_in5.bam name |
| Test-6 |
umi_tag: BX input: group_in6.bam method: directional extract_umi_method: read_id |
attributes: name |
group_in6.bam name |