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Repository revision

Revision: 1:88b8c2916784

Repository 'samtools_idxstats'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats

IdxStats tool metadata

Miscellaneous

Name: IdxStats

Description: reports stats of the BAM index file

Id: samtools_idxstats

Guid: toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0.1

Version: 2.0.1

Version command string: samtools 2>&1 | grep Version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0.2

toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0.1 (this tool)

toolshed.g2.bx.psu.edu/repos/devteam/samtools_idxstats/samtools_idxstats/2.0

samtools_idxstats

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

samtools

1.3.1

package

Functional tests

name

inputs

outputs

required files

Test-1

input: phiX.bam

output: samtools_idxstats_out.tabular

phiX.bam
samtools_idxstats_out.tabular