Repository revision
7:43aac8d29685

Repository 'ivar_removereads'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads

ivar removereads tool metadata
Miscellaneous
Remove reads from trimmed BAM file
ivar_removereads
toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.3.1+galaxy0
1.3.1+galaxy0
ivar version | grep version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.3.1+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.3.1+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.2.2+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.2.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.2.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.0.1+galaxy0
ivar_removereads
Requirements (dependencies defined in the <requirements> tag set)
name version type
ivar 1.3.1 package
python 3.8.1 package
Functional tests
name inputs outputs required files
Test-1 input_bam: zika/Z52_a.trimmed.sorted.bam
variants_tsv: zika/primers_Z52_consensus.tsv
input_bed: zika/db/zika_primers_consensus.bed
amplicon_info: zika/db/pair_information.tsv
name: value
zika/Z52_a.trimmed.sorted.bam
zika/primers_Z52_consensus.tsv
zika/db/zika_primers_consensus.bed
zika/db/pair_information.tsv
value