Repository revision
0:bd2a7d1316b9

Repository 'ivar_removereads'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads

ivar removereads tool metadata
Miscellaneous
Remove reads from trimmed BAM file
ivar_removereads
toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.0.1+galaxy0
1.0.1+galaxy0
ivar version | grep version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.2+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/ivar_removereads/ivar_removereads/1.0.1+galaxy0 (this tool)
ivar_removereads
Requirements (dependencies defined in the <requirements> tag set)
name version type
ivar 1.0.1 package
samtools 1.9 package
Functional tests
name inputs outputs required files
Test-1 primer_index: zika/primer_mismatchers_indices.txt
input_bed: zika/db/zika_primers.bed
input_bam: zika/Z52_a.trimmed.sorted.bam
attributes: name
zika/Z52_a.trimmed.sorted.bam
zika/primer_mismatchers_indices.txt
zika/db/zika_primers.bed
name