Repository revision
6:9163e1db4c16

Repository 'bam_to_bigwig'
hg clone https://toolshed.g2.bx.psu.edu/repos/brad-chapman/bam_to_bigwig

BAM to BigWig tool metadata
Miscellaneous
Calculates coverage from a BAM alignment file
bam_to_bigwig
toolshed.g2.bx.psu.edu/repos/brad-chapman/bam_to_bigwig/bam_to_bigwig/0.2.0
0.2.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/brad-chapman/bam_to_bigwig/bam_to_bigwig/0.2.0 (this tool)
toolshed.g2.bx.psu.edu/repos/brad-chapman/bam_to_bigwig/bam_to_bigwig/0.1.1
toolshed.g2.bx.psu.edu/repos/brad-chapman/bam_to_bigwig/bam_to_bigwig/0.1.0
toolshed.g2.bx.psu.edu/repos/brad-chapman/bam_to_bigwig/bam_to_bigwig/0.0.2
toolshed.g2.bx.psu.edu/repos/brad-chapman/bam_to_bigwig/bam_to_bigwig/0.0.1
bam_to_bigwig
Requirements (dependencies defined in the <requirements> tag set)
name version type
pysam 0.8.3 package
bedtools 2.24 package
ucsc_tools 312 package
Functional tests
name inputs outputs required files
Test-1 align: bam_to_bigwig_test.bam
out: bam_to_bigwig_test.bigwig
bam_to_bigwig_test.bam
bam_to_bigwig_test.bigwig