| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/tetoolkit_tetranscripts/tetoolkit_tetranscripts/2.2.3+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/tetoolkit_tetranscripts/tetoolkit_tetranscripts/2.2.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/tetoolkit_tetranscripts/tetoolkit_tetranscripts/2.2.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/tetoolkit_tetranscripts/tetoolkit_tetranscripts/2.1.4+galaxy0 |
| tetoolkit_tetranscripts |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| tetranscripts | 2.2.3 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
sample_rep_0|t: treatment1.bam sample_rep_0|c: control1.bam sample_rep_1|t: treatment2.bam sample_rep_1|c: control2.bam GTF: gtf.gtf TE: te.gtf |
name: value name: value name: value |
treatment1.bam control1.bam treatment2.bam control2.bam gtf.gtf te.gtf value |
| Test-2 |
sample_rep_0|t: treatment1.bam sample_rep_0|c: control1.bam sample_rep_1|t: treatment2.bam sample_rep_1|c: control2.bam GTF: gtf.gtf TE: te.gtf io|stranded: forward io|sortByPos: True ap|mode: uniq ap|minread: 2 ap|fragmentLength: 10 ap|iteration: 90 ap|padj: 0.06 ap|foldchange: 2.0 oo|out: ['cnttable', 'deseq2', 'gta', 'sgt', 'log'] |
name: value name: value name: value name: value name: value |
treatment1.bam control1.bam treatment2.bam control2.bam gtf.gtf te.gtf value |
| Test-3 |
sample_rep_0|t: treatment1.bam sample_rep_0|c: control1.bam sample_rep_1|t: treatment2.bam sample_rep_1|c: control2.bam GTF: gtf.gtf TE: te.gtf io|stranded: reverse oo|out: ['cnttable', 'deseq2', 'gta', 'sgt', 'log'] |
name: value name: value name: value name: value name: value |
treatment1.bam control1.bam treatment2.bam control2.bam gtf.gtf te.gtf value |