Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_refmap/stacks2_refmap/2.4+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_refmap/stacks2_refmap/2.4+galaxy0 (this tool) |
stacks2_refmap |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
stacks | 2.4 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
popmap: denovo_map/popmap_cstacks.tsv input_bam: ['refmap/PopA_01.bam', 'refmap/PopA_02.bam'] add_log: True |
attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name |
refmap/PopA_01.bam refmap/PopA_02.bam denovo_map/popmap_cstacks.tsv name |
Test-2 |
add_log: True model_options|gt_alpha: 0.1 popmap: denovo_map/popmap_cstacks.tsv input_bam: ['refmap/PopA_01.bam', 'refmap/PopA_02.bam'] model_options|var_alpha: 0.1 paired_select: --unpaired |
attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name |
refmap/PopA_01.bam refmap/PopA_02.bam denovo_map/popmap_cstacks.tsv name |