| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_refmap/stacks2_refmap/2.4+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_refmap/stacks2_refmap/2.4+galaxy0 (this tool) |
| stacks2_refmap |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| stacks | 2.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
popmap: denovo_map/popmap_cstacks.tsv input_bam: ['refmap/PopA_01.bam', 'refmap/PopA_02.bam'] add_log: True |
attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name |
refmap/PopA_01.bam refmap/PopA_02.bam denovo_map/popmap_cstacks.tsv name |
| Test-2 |
add_log: True model_options|gt_alpha: 0.1 popmap: denovo_map/popmap_cstacks.tsv input_bam: ['refmap/PopA_01.bam', 'refmap/PopA_02.bam'] model_options|var_alpha: 0.1 paired_select: --unpaired |
attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name |
refmap/PopA_01.bam refmap/PopA_02.bam denovo_map/popmap_cstacks.tsv name |