Repository revision
3:ef4c80837bc5

Repository 'scater_plot_dist_scatter'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_dist_scatter

Scater: plot library QC tool metadata
Miscellaneous
to visualise library size, feature counts and mito gene expression
scater_plot_dist_scatter
toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_dist_scatter/scater_plot_dist_scatter/1.22.0
1.22.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_dist_scatter/scater_plot_dist_scatter/1.22.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_dist_scatter/scater_plot_dist_scatter/1.20.0
toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_dist_scatter/scater_plot_dist_scatter/1.12.2
toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_dist_scatter/scater_plot_dist_scatter/1.10.1
scater_plot_dist_scatter
Requirements (dependencies defined in the <requirements> tag set)
name version type
bioconductor-scater 1.22.0 package
r-optparse 1.7.1 package
r-workflowscriptscommon 0.0.7 package
bioconductor-loomexperiment 1.12.0 package
r-ggpubr 0.4.0 package
r-scales 1.1.1 package
Additional information about this tool
Rscript '$__tool_directory__/scater-plot-dist-scatter.R'
-i '$input_loom'
-o '$output_plot'
$plot_log
    
None
False
Functional tests
name inputs outputs required files
Test-1 input_loom: scater_qcready.loom
plot_log: False
name: value
scater_qcready.loom
value
Test-2 input_loom: scater_qcready.loom
plot_log: True
name: value
scater_qcready.loom
value