Repository revision
19:12615d397df7

Repository 'text_processing'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/text_processing

Search in textfiles tool metadata
Miscellaneous
(grep)
tp_grep_tool
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0
9.3+galaxy0
grep --version | head -n 1
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy1
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1
toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.0.0
tp_grep_tool
Requirements (dependencies defined in the <requirements> tag set)
name version type
grep 3.11 package
sed 4.8 package
Functional tests
name inputs outputs required files
Test-1 infile: grep1.txt
invert:
regex_type: -P
url_paste: AA.{2}GT
case_sensitive:
lines_before: 1
lines_after: 0
color: NOCOLOR
name: value
grep1.txt
value
Test-2 infile: grep1.txt
invert:
regex_type: -P
url_paste: AA.{2}GT
case_sensitive:
lines_before: 0
lines_after: 0
color: COLOR
name: value
grep1.txt
value
Test-3 infile: egrep1.txt
invert:
regex_type: -E
url_paste: [^ ]+
case_sensitive:
lines_before: 0
lines_after: 0
color: NOCOLOR
name: value
egrep1.txt
value
Test-4 infile: egrep1.txt
invert:
regex_type: -G
url_paste: [^ ]\+
case_sensitive:
lines_before: 0
lines_after: 0
color: NOCOLOR
name: value
egrep1.txt
value