| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_uniq_tool/9.3+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_uniq_tool/9.3+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_uniq_tool/1.1.1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_uniq_tool/1.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_uniq_tool/1.0.0 |
| tp_uniq_tool |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| coreutils | 9.3 | package |
| sed | 4.8 | package |
| Additional information about this tool |
uniq
#if $skipfields:
-f $skipfields
#end if
$ignorecase
#if $grouping.grouping_select == 'yes':
--group=$grouping.group
#else:
$grouping.count
$grouping.repeated
$grouping.uniqueonly
#end if
'$infile'
#if $grouping.grouping_select == 'no' and $grouping.count:
## count will print the count with spaces in front of the line and
## with a space (not a tab) after the number, we need to cahnge that
| sed -e 's/ *//' -e 's/ /\t/'
#end if
> '$outfile'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
infile: sorted_uniq1.tabular grouping|count: True grouping|uniqueonly: True grouping|grouping_select: no ignorecase: True |
name: value |
sorted_uniq1.tabular value |
| Test-2 |
infile: sorted_uniq1.tabular grouping|group: separate grouping|grouping_select: yes ignorecase: True |
name: value |
sorted_uniq1.tabular value |