| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/1.0.0 |
| tp_find_and_replace |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| perl | 5.32 | package |
| Additional information about this tool |
#for $i, $el in enumerate($find_and_replace)
#if $i == (len($find_and_replace) - 1)
#set $join = ""
#else
#set $join = "|"
#end if
perl '$__tool_directory__/find_and_replace'
#if $el.searchwhere.searchwhere_select == "column":
-c $el.searchwhere.column
#end if
#if $i == (len($find_and_replace) - 1)
-o '$outfile'
#end if
$el.global
$el.caseinsensitive
$el.wholewords
$el.skip_first_line
$el.is_regex
'$el.find_pattern'
'$el.replace_pattern'
#if $i == 0
'$infile'
#end if
$join
#end for
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
infile: find_and_replace1.txt find_and_replace_0|find_pattern: day find_and_replace_0|replace_pattern: great day find_and_replace_0|is_regex: False find_and_replace_0|global: True find_and_replace_0|caseinsensitive: False find_and_replace_0|wholewords: True |
name: value |
find_and_replace1.txt value |
| Test-2 |
infile: find_and_replace1.txt find_and_replace_0|find_pattern: day find_and_replace_0|replace_pattern: great day find_and_replace_0|is_regex: False find_and_replace_0|global: True find_and_replace_0|caseinsensitive: False find_and_replace_0|wholewords: True find_and_replace_0|searchwhere|column: 1 find_and_replace_0|searchwhere|searchwhere_select: column |
name: value |
find_and_replace1.txt value |
| Test-3 |
infile: find_and_replace2.txt find_and_replace_0|find_pattern: ^chr find_and_replace_0|replace_pattern: find_and_replace_0|is_regex: True find_and_replace_0|caseinsensitive: False find_and_replace_0|wholewords: False find_and_replace_0|searchwhere|column: 3 find_and_replace_0|searchwhere|searchwhere_select: column |
name: value |
find_and_replace2.txt value |
| Test-4 |
infile: find_and_replace1.txt find_and_replace_0|find_pattern: day find_and_replace_0|replace_pattern: great day find_and_replace_0|is_regex: False find_and_replace_0|global: True find_and_replace_0|caseinsensitive: False find_and_replace_0|wholewords: True find_and_replace_1|find_pattern: great find_and_replace_1|replace_pattern: best find_and_replace_1|is_regex: False find_and_replace_1|global: False find_and_replace_1|caseinsensitive: False find_and_replace_1|wholewords: True |
name: value |
find_and_replace1.txt value |