| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/9.3+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/9.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3 |
| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.2 |
| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.0.0 |
| tp_replace_in_column |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| gawk | 5.3.0 | package |
| Additional information about this tool |
awk
-v OFS="\t"
-v FS="\t"
--re-interval
--sandbox
'{
#for $replacement in $replacements:
\$$replacement.column = gensub( /$replacement.find_pattern/, "$replacement.replace_pattern", "g", \$$replacement.column ) ;
#end for
print \$0 ; }'
'$infile'
> '$outfile'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
infile: replace_text_in_column1.txt replacements_0|column: 4 replacements_0|find_pattern: .+_(R.) replacements_0|replace_pattern: \\1 |
name: value |
replace_text_in_column1.txt value |
| Test-2 |
infile: replace_text_in_column1.txt replacements_0|column: 1 replacements_0|find_pattern: [a-z]{2}([a-z]) replacements_0|replace_pattern: \\1 replacements_1|column: 4 replacements_1|find_pattern: .+_(R.) replacements_1|replace_pattern: \\1 |
name: value |
replace_text_in_column1.txt value |