| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/9.3+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/9.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.0.0 |
| tp_sort_header_tool |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| coreutils | 9.3 | package |
| sed | 4.8 | package |
| Additional information about this tool |
(
LC_ALL=C
#if int($header) > 0:
sed -u '${header}'q &&
#end if
sort $unique $ignore_case --stable -t ' '
#for $key in $sortkeys:
-k '${key.column}${key.order}${key.style},${key.column}'
#end for
) < '${infile}' > '${outfile}'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
infile: sort1.bed header: 3 sortkeys_0|column: 1 sortkeys_0|order: sortkeys_0|style: sortkeys_1|column: 3 sortkeys_1|order: r sortkeys_1|style: n |
name: value |
sort1.bed value |
| Test-2 |
infile: sort1.bed header: 3 sortkeys_0|column: 1 sortkeys_0|order: sortkeys_0|style: sortkeys_1|column: 3 sortkeys_1|order: sortkeys_1|style: n |
name: value |
sort1.bed value |
| Test-3 |
infile: sort2.bed sortkeys_0|column: 5 sortkeys_0|order: sortkeys_0|style: g |
name: value |
sort2.bed value |