Revision: 5:8d9ceaec2c7f

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_run_tsne

Miscellaneous

Name: Seurat RunTSNE

Description: run t-SNE dimensionality reduction

Id: seurat_run_tsne

Guid: toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_run_tsne/seurat_run_tsne/3.2.3+galaxy0

Version: 3.2.3+galaxy0

Version command string: echo $(R --version | grep version | grep -v GNU)", seurat version" $(R --vanilla --slave -e "library(seurat); cat(sessionInfo()\$otherPkgs\$seurat\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_run_tsne/seurat_run_tsne/4.0.4+galaxy0

toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_run_tsne/seurat_run_tsne/3.2.3+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_run_tsne/seurat_run_tsne/3.1.2+galaxy0

toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_run_tsne/seurat_run_tsne/3.1.1+galaxy1

toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_run_tsne/seurat_run_tsne/3.1.1_0.0.6+galaxy0

toolshed.g2.bx.psu.edu/repos/ebi-gxa/seurat_run_tsne/seurat_run_tsne/2.3.1+galaxy1

seurat_run_tsne

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name	version	type
seurat-scripts	0.3.0	package

Functional tests

name	inputs	outputs	required files
Test-1	input|rds_seurat_file: E-MTAB-6077-3k_features_90_cells-clusters.rds	name: value	E-MTAB-6077-3k_features_90_cells-clusters.rds value