| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/magicblast/magicblast/1.7.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/magicblast/magicblast/1.7.0+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/magicblast/magicblast/1.6.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/magicblast/magicblast/1.6.0+galaxy0 |
| magicblast |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| magicblast | 1.7.0 | package |
| samtools | 1.16.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
query: query1.fasta.gz db_opts|subject: subject1.fasta.gz db_opts|db_opts_selector: file |
name: value |
query1.fasta.gz subject1.fasta.gz value |
| Test-2 |
query: query1.fasta.gz db_opts|subject: subject1.fasta.gz db_opts|db_opts_selector: file output_options|report_unaligned_cond|report_unaligned_separately_cond|unaligned_fmt_cond|unaligned_fmt: tabular output_options|report_unaligned_cond|report_unaligned_separately_cond|report_unaligned_separately: yes |
name: value name: value |
query1.fasta.gz subject1.fasta.gz value |
| Test-3 |
query: query1.fasta.gz db_opts|subject: subject1.fasta.gz db_opts|db_opts_selector: file restrict_search|gilist: gilist1.tabular output_options|report_unaligned_cond|report_unaligned_separately_cond|report_unaligned_separately: yes |
query1.fasta.gz subject1.fasta.gz gilist1.tabular |
|
| Test-4 |
query: query1.fasta.gz db_opts|database: phiX174 db_opts|db_opts_selector: db restrict_search|taxidlist: taxids.tabular |
query1.fasta.gz taxids.tabular |
|
| Test-5 |
query: query_forward1.fastqsanger.gz query_mate: query_reverse1.fastqsanger.gz db_opts|subject: subject1.fasta.gz db_opts|db_opts_selector: file |
name: value |
query_forward1.fastqsanger.gz query_reverse1.fastqsanger.gz subject1.fasta.gz value |
| Test-6 |
query: query_forward1.fastqsanger.gz query_mate: query_reverse1.fastqsanger.gz db_opts|database: phiX174 db_opts|db_opts_selector: db |
name: value |
query_forward1.fastqsanger.gz query_reverse1.fastqsanger.gz value |