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Repository revision

Revision: 1:d21f004a8e1d

Repository 'mothur_make_sra'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_sra

Make.sra tool metadata

Miscellaneous

Name: Make.sra

Description: creates the necessary files for a NCBI submission

Id: mothur_make_sra

Guid: toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_sra/mothur_make_sra/1.36.1.0

Version: 1.36.1.0

Version command string: mothur "#help()" | sed '7q;d' | cut -d" " -f2

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_sra/mothur_make_sra/1.39.5.0

toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_sra/mothur_make_sra/1.36.1.0 (this tool)

mothur_make_sra

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

mothur

1.36.1

package

Functional tests

name

inputs

outputs

required files

Test-1

project: makesra.project
sff: Fasting_Example1.sff
mimark: biosample.tsv
oligos: GQY1XT001.oligos

fasta_out: None
qual_out: None
flow_out: None
scrap_sff: None
submission_xml: None
logfile: None

makesra.project
Fasting_Example1.sff
GQY1XT001.oligos
biosample.tsv