Repository revision
10:8286e361f89c

Repository 'hicexplorer_hicaggregatecontacts'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts

hicAggregateContacts tool metadata
Miscellaneous
allow plotting of aggregated Hi-C contacts between regions specified in a file
hicexplorer_hicaggregatecontacts
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/3.4.3.0
3.4.3.0
hicAggregateContacts --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/3.6+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/3.4.3.0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/3.4.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/3.4.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/3.3.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/2.1.4.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/2.1.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/2.1.0
hicexplorer_hicaggregatecontacts
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.4.3 package
Functional tests
name inputs outputs required files
Test-1 matrix_h5_cooler: Li_et_al_2015.cool
BED: hicAggregateContacts/test_regions.bed
range_min: 50000
range_max: 900000
numberOfBins: 30
image_file_format: png
name: value
Li_et_al_2015.cool
hicAggregateContacts/test_regions.bed
value