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Repository revision

Revision: 5:ce16a538ab46

Repository 'hicexplorer_hicaggregatecontacts'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts

hicAggregateContacts tool metadata

Miscellaneous

Name: hicAggregateContacts

Description: allow plotting of aggregated Hi-C contacts between regions specified in a file

Id: hicexplorer_hicaggregatecontacts

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/3.3.1.0

Version: 3.3.1.0

Version command string: hicAggregateContacts --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/3.4.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/3.3.1.0 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/2.1.4.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/2.1.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/2.1.0

hicexplorer_hicaggregatecontacts

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hicexplorer

3.3.1

package

Functional tests

name

inputs

outputs

required files

Test-1

numberOfBins: 30
range_min: 50000
range_max: 900000
BED: hicAggregateContacts/test_regions.bed
image_file_format: png
matrix_h5_cooler: Li_et_al_2015.cool

attributes: name

Li_et_al_2015.cool
hicAggregateContacts/test_regions.bed
name