Repository revision
5:ce16a538ab46

Repository 'hicexplorer_hicaggregatecontacts'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts

hicAggregateContacts tool metadata
Miscellaneous
allow plotting of aggregated Hi-C contacts between regions specified in a file
hicexplorer_hicaggregatecontacts
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/3.3.1.0
3.3.1.0
hicAggregateContacts --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/3.4.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/3.3.1.0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/2.1.4.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/2.1.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicaggregatecontacts/hicexplorer_hicaggregatecontacts/2.1.0
hicexplorer_hicaggregatecontacts
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.3.1 package
Functional tests
name inputs outputs required files
Test-1 numberOfBins: 30
range_min: 50000
range_max: 900000
BED: hicAggregateContacts/test_regions.bed
image_file_format: png
matrix_h5_cooler: Li_et_al_2015.cool
attributes: name
Li_et_al_2015.cool
hicAggregateContacts/test_regions.bed
name