| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/quicktree/quicktree/2.5+galaxy0 (this tool) |
| quicktree |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| quicktree | 2.5 | package |
| hmmer | 3.4 | package |
| Additional information about this tool |
## convert alignment to stockholm before quicktree if needed
#if $input_type.format == "align"
esl-reformat -o input.quicktree stockholm '$input_file' ##--informat a2m
#else
ln -s '$input_file' input.quicktree
#end if
&&
quicktree
#if $input_type.format =="align"
-in a
#else
-in m
#end if
#if $output_type == 'tree_out'
-out t
#else
-out m
#end if
$upgma
$kimura
#if $boot
-boot $boot
#end if
input.quicktree
> '$output_file'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_type|input_file: example.009.AA.fasta input_type|format: align |
name: value |
example.009.AA.fasta value |
| Test-2 |
input_type|input_file: example.009.AA.stockholm input_type|format: align |
name: value |
example.009.AA.stockholm value |
| Test-3 |
input_type|input_file: example.011.AA.clw input_type|format: align |
name: value |
example.011.AA.clw value |
| Test-4 |
input_type|input_file: example.001.AA.dist.lt.phy input_type|format: dist |
name: value |
example.001.AA.dist.lt.phy value |
| Test-5 |
input_type|input_file: example_dist_square_phylip.dist input_type|format: dist |
name: value |
example_dist_square_phylip.dist value |
| Test-6 |
input_type|input_file: example.011.AA.phy input_type|format: align |
name: value |
example.011.AA.phy value |
| Test-7 |
input_type|input_file: example.009.AA.fasta input_type|format: align output_type: dist_out |
name: value |
example.009.AA.fasta value |
| Test-8 |
input_type|input_file: example.011.AA.phy input_type|format: align upgma: True kimura: True boot: 100 |
name: value |
example.011.AA.phy value |