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Repository revision

Revision: 0:57e76d405a97

Repository 'itsx'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/aafc-mbb/itsx

ITSx Extractor tool metadata

Miscellaneous

Name: ITSx Extractor

Description: ITSx -- Identifies ITS sequences and extracts the ITS region

Id: ITSx

Guid: toolshed.g2.bx.psu.edu/repos/aafc-mbb/itsx/ITSx/1.0.11

Version: 1.0.11

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/aafc-mbb/itsx/ITSx/1.0.11 (this tool)

ITSx

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hmmer

3.1b2

package

Functional tests

name

inputs

outputs

required files

Test-1

reset: True
heuristics: False
hmmer_search|search: eval
allow_reorder: False
domain_score: 0
complement: True
preserve: False
domain_eval: 0.00001
hmmer_search|eval_cutoff: 0.01
domain_num: 2
truncate: True
input: testITSsequences.fasta

ITS1: expectedOutput.ITS1.fasta
ITS2: expectedOutput.ITS2.fasta
fullfasta: expectedOutput.full.fasta
graph: expectedOutput.graph
positions: expectedOutput.positions.txt
problematic: expectedOutput.problematic.txt
extractions: expectedOutput.extractions.txt

testITSsequences.fasta
expectedOutput.ITS1.fasta
expectedOutput.ITS2.fasta
expectedOutput.full.fasta
expectedOutput.graph
expectedOutput.positions.txt
expectedOutput.problematic.txt
expectedOutput.extractions.txt