| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefindercentroided/FeatureFinderCentroided/2.8+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefindercentroided/FeatureFinderCentroided/2.6+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefindercentroided/FeatureFinderCentroided/2.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefindercentroided/FeatureFinderCentroided/2.3.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefindercentroided/FeatureFinderCentroided/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefindercentroided/FeatureFinderCentroided/2.1.0 |
| FeatureFinderCentroided |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.6 | package |
| openms-thirdparty | 2.6 | package |
| blast | 2.9.0 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: FeatureFinderCentroided_1_input.mzML algorithm|intensity|bins: 1 algorithm|mass_trace|mz_tolerance: 0.02 algorithm|mass_trace|min_spectra: 14 algorithm|mass_trace|max_missing: 1 algorithm|mass_trace|slope_bound: 0.1 algorithm|isotopic_pattern|charge_low: 2 algorithm|isotopic_pattern|charge_high: 2 algorithm|isotopic_pattern|mz_tolerance: 0.02 algorithm|isotopic_pattern|intensity_percentage: 10.0 algorithm|isotopic_pattern|intensity_percentage_optional: 0.1 algorithm|isotopic_pattern|optional_fit_improvement: 2.0 algorithm|isotopic_pattern|mass_window_width: 100.0 algorithm|isotopic_pattern|abundance_12C: 98.93 algorithm|isotopic_pattern|abundance_14N: 99.632 algorithm|seed|min_score: 0.8 algorithm|fit|max_iterations: 500 algorithm|feature|min_score: 0.7 algorithm|feature|min_isotope_fit: 0.8 algorithm|feature|min_trace_score: 0.5 algorithm|feature|min_rt_span: 0.333 algorithm|feature|max_rt_span: 2.5 algorithm|feature|rt_shape: symmetric algorithm|feature|max_intersection: 0.35 algorithm|feature|reported_mz: monoisotopic algorithm|user-seed|rt_tolerance: 5.0 algorithm|user-seed|mz_tolerance: 1.1 algorithm|user-seed|min_score: 0.5 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FeatureFinderCentroided_1_input.mzML value |