Repository revision
0:1f0a3e4497d4

Repository 'fraggenescan'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/fraggenescan

FragGeneScan tool metadata
Miscellaneous
FragGeneScan
for finding (fragmented) genes in short reads
fraggenescan
toolshed.g2.bx.psu.edu/repos/iuc/fraggenescan/fraggenescan/1.30.0
1.30.0
1.30
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/fraggenescan/fraggenescan/1.30.0 (this tool)
fraggenescan
Requirements (dependencies defined in the <requirements> tag set)
name version type
fraggenescan 1.30 package
Functional tests
name inputs outputs required files
Test-1 train: complete
genome: contigs.fasta
complete: False
coord: contigs.out
nt_seq: contigs.ffn
prot_seq: contigs.faa
gff: contigs.gff
contigs.fasta
contigs.out
contigs.ffn
contigs.faa
contigs.gff
Test-2 train: complete
genome: NC_000913.fasta
complete: True
coord: NC_000913.out
nt_seq: NC_000913.ffn
prot_seq: NC_000913.faa
gff: NC_000913.gff
NC_000913.fasta
NC_000913.out
NC_000913.ffn
NC_000913.faa
NC_000913.gff
Test-3 train: 454_10
genome: NC_000913-454.fasta
complete: False
coord: NC_000913-454.out
nt_seq: NC_000913-454.ffn
prot_seq: NC_000913-454.faa
gff: NC_000913-454.gff
NC_000913-454.fasta
NC_000913-454.out
NC_000913-454.ffn
NC_000913-454.faa
NC_000913-454.gff