Repository revision
1:2dfb2fba4081

Repository 'fraggenescan'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/fraggenescan

FragGeneScan tool metadata
Miscellaneous
FragGeneScan
for finding (fragmented) genes in short reads
fraggenescan
toolshed.g2.bx.psu.edu/repos/iuc/fraggenescan/fraggenescan/1.30.0
1.30.0
1.30
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/fraggenescan/fraggenescan/1.30.0 (this tool)
fraggenescan
Requirements (dependencies defined in the <requirements> tag set)
name version type
fraggenescan 1.30 package
Additional information about this tool
run_FragGeneScan.pl
    -genome='$genome'
    -out="output_file_name"
    -complete='$complete'
    -train='$train'
    -thread=\${GALAXY_SLOTS:-4}
    
None
False
Functional tests
name inputs outputs required files
Test-1 genome: contigs.fasta
complete: False
train: complete
name: value
name: value
name: value
name: value
contigs.fasta
value
Test-2 genome: NC_000913.fasta
complete: True
train: complete
name: value
name: value
name: value
name: value
NC_000913.fasta
value
Test-3 genome: NC_000913-454.fasta
complete: False
train: 454_10
name: value
name: value
name: value
name: value
NC_000913-454.fasta
value