| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.4.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.3.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.2.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/split_file_to_collection/split_file_to_collection/0.1.1 |
| split_file_to_collection |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| python | 3.5 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
split_parms|select_ftype: tabular split_parms|split_by|id_col: 1 split_parms|split_by|match_regex: (.*)\.mgf split_parms|split_by|sub_regex: \1.tab split_parms|split_by|select_split_by: col split_parms|top: 2 split_parms|input: test.tabular |
test.tabular |
|
| Test-2 |
split_parms|select_ftype: tabular split_parms|split_by|newfilenames: test split_parms|split_by|select_mode|mode: numnew split_parms|split_by|select_split_by: row split_parms|split_by|select_mode|numnew: 2 split_parms|top: 2 split_parms|input: test.tabular |
test.tabular |
|
| Test-3 |
split_parms|select_ftype: tabular split_parms|split_by|select_allocate|allocate: batch split_parms|split_by|newfilenames: batch_tab split_parms|split_by|select_mode|mode: numnew split_parms|split_by|select_split_by: row split_parms|split_by|select_mode|numnew: 2 split_parms|top: 2 split_parms|input: test.tabular |
test.tabular |
|
| Test-4 |
split_parms|select_ftype: tabular split_parms|split_by|select_allocate|allocate: batch split_parms|split_by|select_mode|chunksize: 2 split_parms|split_by|newfilenames: batch_tab split_parms|split_by|select_mode|mode: chunk split_parms|split_by|select_split_by: row split_parms|top: 2 split_parms|input: test.tabular |
test.tabular |
|
| Test-5 |
split_parms|select_ftype: txt split_parms|select_mode|numnew: 24 split_parms|newfilenames: chr split_parms|select_mode|mode: numnew split_parms|input: karyotype.txt split_parms|select_allocate|allocate: batch |
karyotype.txt |
|
| Test-6 |
split_parms|select_ftype: tabular split_parms|split_by|id_col: 10 split_parms|split_by|match_regex: (.*)\.mgf split_parms|split_by|sub_regex: \1.tab split_parms|split_by|select_split_by: col split_parms|top: 1 split_parms|input: psm.tabular |
psm.tabular |
|
| Test-7 |
split_parms|newfilenames: demo split_parms|select_mode|numnew: 3 split_parms|select_ftype: mgf split_parms|input: demo758Dacentroid.mgf split_parms|select_mode|mode: numnew |
demo758Dacentroid.mgf |
|
| Test-8 |
split_parms|newfilenames: test split_parms|select_mode|numnew: 2 split_parms|select_ftype: fasta split_parms|input: test.fasta split_parms|select_mode|mode: numnew |
test.fasta |
|
| Test-9 |
split_parms|newfilenames: test split_parms|select_mode|chunksize: 3 split_parms|select_ftype: fasta split_parms|input: test.fasta split_parms|select_mode|mode: chunk |
test.fasta |
|
| Test-10 |
split_parms|newfilenames: test split_parms|select_mode|numnew: 2 split_parms|select_ftype: fastq split_parms|input: test.fastq split_parms|select_mode|mode: numnew |
test.fastq |
|
| Test-11 |
split_parms|select_ftype: generic split_parms|split_method|record_length: 4 split_parms|select_mode|numnew: 2 split_parms|newfilenames: test split_parms|select_mode|mode: numnew split_parms|input: test.fastq split_parms|split_method|select_split_method: number |
test.fastq |
|
| Test-12 |
split_parms|select_ftype: fasta split_parms|select_mode|numnew: 2 split_parms|newfilenames: rand split_parms|select_mode|mode: numnew split_parms|select_allocate|seed: 1010 split_parms|input: test.fasta split_parms|select_allocate|allocate: random |
test.fasta |
|
| Test-13 |
split_parms|select_ftype: fasta split_parms|select_mode|numnew: 2 split_parms|newfilenames: fasta_batch split_parms|select_mode|mode: numnew split_parms|input: test.fasta split_parms|select_allocate|allocate: batch |
test.fasta |
|
| Test-14 |
split_parms|newfilenames: test split_parms|select_mode|numnew: 2 split_parms|select_ftype: txt split_parms|input: test.tabular split_parms|select_mode|mode: numnew |
test.tabular |
|
| Test-15 |
split_parms|select_ftype: generic split_parms|select_mode|numnew: 2 split_parms|newfilenames: test split_parms|split_method|generic_regex: ^.* split_parms|select_mode|mode: numnew split_parms|input: test.tabular split_parms|split_method|select_split_method: regex |
test.tabular |
|
| Test-16 |
split_parms|select_ftype: generic split_parms|select_mode|numnew: 2 split_parms|newfilenames: rand split_parms|split_method|generic_regex: ^>.* split_parms|select_mode|mode: numnew split_parms|select_allocate|seed: 1010 split_parms|split_method|select_split_method: regex split_parms|input: test.fasta split_parms|select_allocate|allocate: random |
test.fasta |
|
| Test-17 |
split_parms|select_ftype: sdf split_parms|select_mode|numnew: 10 split_parms|newfilenames: mol split_parms|select_mode|mode: numnew split_parms|input: 3_molecules.sdf split_parms|select_allocate|allocate: batch |
3_molecules.sdf |
|
| Test-18 |
split_parms|select_mode|chunksize: 1 split_parms|newfilenames: mol split_parms|select_ftype: sdf split_parms|select_mode|mode: chunk split_parms|input: 3_molecules.sdf split_parms|select_allocate|allocate: batch |
3_molecules.sdf |
|
| Test-19 |
split_parms|select_ftype: generic split_parms|select_mode|numnew: 2 split_parms|newfilenames: rand split_parms|split_method|generic_regex: ^[^>].* split_parms|split_method|split_after: true split_parms|select_mode|mode: numnew split_parms|select_allocate|seed: 1010 split_parms|split_method|select_split_method: regex split_parms|input: test.fasta split_parms|select_allocate|allocate: random |
test.fasta |