Repository revision
7:be95355fef8d

Repository 'nanopolish_methylation'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_methylation

Nanopolish methylation tool metadata
Miscellaneous
- Classify nucleotides as methylated or not.
nanopolish_methylation
toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_methylation/nanopolish_methylation/0.13.2+galaxy0
0.13.2+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_methylation/nanopolish_methylation/0.14.0+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_methylation/nanopolish_methylation/0.13.2+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_methylation/nanopolish_methylation/0.11.1
toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_methylation/nanopolish_methylation/0.1.0
nanopolish_methylation
Requirements (dependencies defined in the <requirements> tag set)
name version type
nanopolish 0.13.2 package
Functional tests
name inputs outputs required files
Test-1 input_merged: reads.fasta
input_reads_raw: fast5_files.tar.gz
b: reads.sorted.bam
reference_source|ref_file: draft.fa
reference_source|reference_source_selector: history
w: tig00000001:200000-202000
batchsize: 512
name: value
reads.fasta
fast5_files.tar.gz
reads.sorted.bam
draft.fa
value
Test-2 input_merged: reads.fasta
input_reads_raw: fast5_files.tar.gz
b: reads.sorted.bam
reference_source|ref_file: draft.fa
reference_source|reference_source_selector: history
w: tig00000001:200000-202000
batchsize: 512
name: value
reads.fasta
fast5_files.tar.gz
reads.sorted.bam
draft.fa
value