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Repository revision

Revision: 0:0254731f047b

Repository 'syndiva'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/syndiva

syndiva tool metadata

Miscellaneous

Name: syndiva

Description: diversity analysis of synthetic libraries of a Fibronectin domain

Id: syndiva

Guid: toolshed.g2.bx.psu.edu/repos/iuc/syndiva/syndiva/1.0

Version: 1.0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/syndiva/syndiva/1.0 (this tool)

syndiva

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

clustalo

1.2.4

package

mcl

14.137

package

matplotlib

2.2.3

package

biopython

1.76

package

Additional information about this tool

Command:

mkdir -p '$report.extra_files_path' &&
    python '$__tool_directory__/syndiva.py'
        -i '$fasta_file'
        -p '$pattern'
        -5 '$restriction_site_5'
        -3 '$restriction_site_3'
        -o '$report.extra_files_path'
    && cp '${report.extra_files_path}'/*\.html output.html

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

fasta_file: syndiva_datatest.fasta
pattern: AAAGSSVSSVPTKLEVVAATPTSLLISWDA:4-6:V:1:YYRITYGETGGNSPVQEFTVPG:3:TATISGLSPGVDYTITVYA:11-12:PISINYRTGTGGSGGSHHHHHHHHGGSYPYDVPDYAPRVG*GRVGSKDIRAETVESCLAKSHTENSFTNVWKDDKTLDRYANYE
restriction_site_5: GCGGCCGC
restriction_site_3: GGTACC

name: value

syndiva_datatest.fasta
value