Repository revision
9:f123155af742

Repository 'qiime_summarize_taxa'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/qiime_summarize_taxa

Summarize taxa tool metadata
Miscellaneous
and store results in a new table or appended to an existing mapping file (summarize_taxa)
qiime_summarize_taxa
toolshed.g2.bx.psu.edu/repos/iuc/qiime_summarize_taxa/qiime_summarize_taxa/1.9.1.0
1.9.1.0
summarize_taxa.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/qiime_summarize_taxa/qiime_summarize_taxa/1.9.1.0 (this tool)
qiime_summarize_taxa
Requirements (dependencies defined in the <requirements> tag set)
name version type
qiime 1.9.1 package
Functional tests
name inputs outputs required files
Test-1 md_identifier: taxonomy
level: ['2', '3', '4', '5', '6']
otu_table_fp: summarize_taxa/otu_table.biom
mapping: summarize_taxa/map.txt
suppress_biom_table_output: False
absolute_abundance: False
suppress_classic_table_output: False
transposed_output: False
md_as_string: False
attributes: name
attributes: name
attributes: name
attributes: name
attributes: name
summarize_taxa/otu_table.biom
summarize_taxa/map.txt
name
Test-2 md_identifier: taxonomy
level: ['3', '6']
otu_table_fp: summarize_taxa/otu_table.biom
suppress_biom_table_output: False
absolute_abundance: False
suppress_classic_table_output: False
transposed_output: False
md_as_string: False
attributes: name
attributes: name
summarize_taxa/otu_table.biom
name