Galaxy |

Repository revision

Revision: 1:2c56a59a112f

Repository 'varscan_mpileup2indel_from_bam'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/yhoogstrate/varscan_mpileup2indel_from_bam

VarScan2 Call INDELs from a mpileup file tool metadata

Miscellaneous

Name: VarScan2 Call INDELs from a mpileup file

Description: VarScan2 INDEL detection (on mpileup data)

Id: varscan_mpileup2indel

Guid: toolshed.g2.bx.psu.edu/repos/yhoogstrate/varscan_mpileup2indel_from_bam/varscan_mpileup2indel/2.4.2.a

Version: 2.4.2.a

Version command string: varscan 2>&1 | head -n 1

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/yhoogstrate/varscan_mpileup2indel_from_bam/varscan_mpileup2indel/2.4.2.a (this tool)

toolshed.g2.bx.psu.edu/repos/yhoogstrate/varscan_mpileup2indel_from_bam/varscan_mpileup2indel/2.3.6.a

varscan_mpileup2indel

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

varscan

2.4.2

package

Functional tests

name

inputs

outputs

required files

Test-1

extended_parameters|parameters: default
mpileup_input: example.mpileup

snv_output: example.vcf

example.mpileup
example.vcf