| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_subsearch/openbabel_subsearch/3.1.1+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_subsearch/openbabel_subsearch/2.4.2.2.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_subsearch/openbabel_subsearch/2.4.2.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_subsearch/openbabel_subsearch/2.4.2.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/openbabel_subsearch/openbabel_subsearch/2.4.1.0 |
| openbabel_subsearch |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openbabel | 3.1.1 | package |
| python | 3.6 | package |
| Additional information about this tool |
python '$__tool_directory__/subsearch.py'
-i '${query}'
--iformat '${query.ext}'
--fastsearch-index '${os.path.join($fastsearch.extra_files_path, 'molecule.fs')}'
-o '${outfile}'
--oformat $oformat
--max-candidates $max_candidates
--processors "\${GALAXY_SLOTS:-12}"
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
query: CID_2244.sdf fastsearch: ob_convert_on_CID2244_obfs.txt oformat: names |
name: value |
CID_2244.sdf ob_convert_on_CID2244_obfs.txt value |