Repository revision
15:b7be725976b6

Repository 'bcftools_reheader'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/bcftools_reheader

bcftools reheader tool metadata
Miscellaneous
Modify header of VCF/BCF files, change sample names
bcftools_reheader
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_reheader/bcftools_reheader/1.10
1.10
bcftools 2>&1 | grep 'Version:'
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_reheader/bcftools_reheader/1.15.1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_reheader/bcftools_reheader/1.10 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_reheader/bcftools_reheader/1.9
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_reheader/bcftools_reheader/1.4.0
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_reheader/bcftools_reheader/1.3.1
toolshed.g2.bx.psu.edu/repos/iuc/bcftools_reheader/bcftools_reheader/1.3.0
bcftools_reheader
Requirements (dependencies defined in the <requirements> tag set)
name version type
bcftools 1.10 package
htslib 1.10 package
Functional tests
name inputs outputs required files
Test-1 input_file: reheader.vcf
sec_default|header: reheader.hdr
output_type: v
name: value
reheader.vcf
reheader.hdr
value
Test-2 input_file: reheader.vcf
sec_default|rename_samples|sample_file: reheader.samples
sec_default|rename_samples|samples_src: history
output_type: v
name: value
reheader.vcf
reheader.samples
value
Test-3 input_file: reheader.vcf
sec_default|rename_samples|sample_file: reheader.samples2
sec_default|rename_samples|samples_src: history
output_type: v
name: value
reheader.vcf
reheader.samples2
value