| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.7.5+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.7.5+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.7.4+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.22.post1+galaxy4 |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.22.post1+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.22.post1+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.22.post1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.22.post1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.19+galaxy0 |
| anndata_import |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| anndata | 0.7.5 | package |
| loompy | 2.0.17 | package |
| scanpy | 1.7.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
hd5_format|in|input: krumsiek11.loom hd5_format|in|sparse: True hd5_format|in|cleanup: False hd5_format|in|x_name: spliced hd5_format|in|obs_names: CellID hd5_format|in|var_names: Gene hd5_format|in|adata_format: loom |
name: value |
krumsiek11.loom value |
| Test-2 |
hd5_format|in|input: adata.csv hd5_format|in|first_column_names: True hd5_format|in|adata_format: tabular |
name: value |
adata.csv value |
| Test-3 |
hd5_format|in|input: adata.tsv hd5_format|in|first_column_names: True hd5_format|in|adata_format: tabular |
name: value |
adata.tsv value |
| Test-4 |
hd5_format|in|matrix: matrix_10x_v1.2.0.mtx hd5_format|in|tenx|use: no hd5_format|in|adata_format: mtx |
name: value |
matrix_10x_v1.2.0.mtx value |
| Test-5 |
hd5_format|in|input: umi_tools.tsv hd5_format|in|adata_format: umi_tools hd5_format|filetype: anndata |
name: value |
umi_tools.tsv value |
| Test-6 |
hd5_format|mainmatrix: firstlayer.tsv hd5_format|other_files: secondlayer.tsv hd5_format|coldata: cols.tsv hd5_format|rowdata: rows.tsv hd5_format|filetype: loom |
name: value |
firstlayer.tsv secondlayer.tsv cols.tsv rows.tsv value |
| Test-7 |
hd5_format|in|input: dropletutils_input.h5 hd5_format|in|adata_format: 10x_h5 hd5_format|filetype: anndata |
name: value |
dropletutils_input.h5 value |