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Repository revision

Revision: 1:1fea05cdc1a1

Repository 'mosaik2'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/crs4/mosaik2

Map with MOSAIK v. 2 tool metadata

Miscellaneous

Name: Map with MOSAIK v. 2

Description:

Id: mosaik2

Guid: toolshed.g2.bx.psu.edu/repos/crs4/mosaik2/mosaik2/2.2.28.0

Version: 2.2.28.0

Version command string: MosaikJump | sed -e 's/\x1b\[[[:digit:]]\{1,2\}\(;[[:digit:]]\{1,2\}\)\{0,1\}m//g' | sed -n 's/MosaikJump \([[:digit:].]\{1,\}\).*/\1/p'

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/crs4/mosaik2/mosaik2/2.2.28.0 (this tool)

toolshed.g2.bx.psu.edu/repos/crs4/mosaik2/mosaik2/2.0.0

mosaik2

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

mosaik

2.2.28

package

samtools

0.1.19

package

Functional tests

name

inputs

outputs

required files

Test-1

outFormat: sam
genomeSource|refGenomeSource: history
mm: 6
reads: mosaik_test_input.fastq
st: 454
paired|kind: single
genomeSource|historyReference: mosaik_test_ref.fasta
bw: 9
act: 35
mhp: 100

output: mosaik_test_out.sam

mosaik_test_ref.fasta
mosaik_test_input.fastq
mosaik_test_out.sam