| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mummer_show_coords/mummer_show_coords/4.0.0+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mummer_show_coords/mummer_show_coords/4.0.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/mummer_show_coords/mummer_show_coords/4.0.0rc1+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/iuc/mummer_show_coords/mummer_show_coords/4.0.0rc1+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/mummer_show_coords/mummer_show_coords/4.0.0beta2+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/mummer_show_coords/mummer_show_coords/4.0.0beta2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/mummer_show_coords/mummer_show_coords/4.0.0beta2 |
| mummer_show_coords |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mummer4 | 4.0.0 | package |
| samtools | 1.21 | package |
| Additional information about this tool |
show-coords
$merge
$direction
-c
-H
-I '$identity'
-l
-L '$min_alignment_length'
$annotate
$sort
-T
'${delta}'
#if $direction:
> '${output_extend}'
#else:
> '${output}'
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
delta: nucmer.txt direction: False |
name: value |
nucmer.txt value |
| Test-2 |
delta: nucmer.txt direction: True |
name: value |
nucmer.txt value |