| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.10.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.7.5+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.7.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.7.4+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.6.22.post1+galaxy4 |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.6.22.post1+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.6.22.post1+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.6.22.post1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.6.22.post1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.6.19+galaxy0 |
| anndata_manipulate |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| anndata | 0.7.5 | package |
| loompy | 2.0.17 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: import.csv.h5ad manipulate|other_adatas: import.csv.h5ad manipulate|join: inner manipulate|batch_key: batch manipulate|index_unique: - manipulate|function: concatenate |
name: value |
import.csv.h5ad value |
| Test-2 |
input: krumsiek11.h5ad manipulate|join: - manipulate|function: obs_names_make_unique |
name: value |
krumsiek11.h5ad value |
| Test-3 |
input: krumsiek11.h5ad manipulate|join: - manipulate|function: var_names_make_unique |
name: value |
krumsiek11.h5ad value |
| Test-4 |
input: krumsiek11.h5ad manipulate|key: cell_type manipulate|categories: Er,Ml,Mt, Ne, pr manipulate|function: rename_categories |
name: value |
krumsiek11.h5ad value |
| Test-5 |
input: krumsiek11.h5ad manipulate|function: strings_to_categoricals |
name: value |
krumsiek11.h5ad value |
| Test-6 |
input: krumsiek11.h5ad manipulate|function: transpose |
name: value |
krumsiek11.h5ad value |
| Test-7 |
input: krumsiek11.h5ad manipulate|var_obs: var manipulate|new_annot: var_add_annotation.tabular manipulate|function: add_annotation |
name: value |
krumsiek11.h5ad var_add_annotation.tabular value |
| Test-8 |
input: krumsiek11.h5ad manipulate|var_obs: obs manipulate|new_annot: obs_add_annotation.tabular manipulate|function: add_annotation |
name: value |
krumsiek11.h5ad obs_add_annotation.tabular value |
| Test-9 |
input: krumsiek11.h5ad manipulate|var_obs: var manipulate|filter|index|text: Gata2,EKLF manipulate|filter|index|format: text manipulate|filter|filter: index manipulate|function: filter |
name: value |
krumsiek11.h5ad value |
| Test-10 |
input: krumsiek11.h5ad manipulate|var_obs: obs manipulate|filter|key: cell_type manipulate|filter|filter_key|filter: equal manipulate|filter|filter_key|value: progenitor manipulate|filter|filter_key|type: text manipulate|filter|filter: key manipulate|function: filter |
name: value |
krumsiek11.h5ad value |
| Test-11 |
input: krumsiek11.h5ad manipulate|function: save_raw |
name: value |
krumsiek11.h5ad value |