Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.7.4+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.6.22.post1+galaxy4 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.6.22.post1+galaxy3 |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.6.22.post1+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.6.22.post1+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.6.22.post1+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_manipulate/anndata_manipulate/0.6.19+galaxy0 |
anndata_manipulate |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
anndata | 0.6.22.post1 | package |
loompy | 2.0.17 | package |
h5py | 2.9.0 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
manipulate|index_unique: - manipulate|join: inner manipulate|batch_key: batch manipulate|other_adatas: import.csv.h5ad input: krumsiek11.h5ad manipulate|function: concatenate |
attributes: name |
krumsiek11.h5ad import.csv.h5ad name |
Test-2 |
input: krumsiek11.h5ad manipulate|function: obs_names_make_unique manipulate|join: - |
attributes: name |
krumsiek11.h5ad name |
Test-3 |
input: krumsiek11.h5ad manipulate|function: var_names_make_unique manipulate|join: - |
attributes: name |
krumsiek11.h5ad name |
Test-4 |
input: krumsiek11.h5ad manipulate|key: cell_type manipulate|function: rename_categories manipulate|categories: Er,Ml,Mt, Ne, pr |
attributes: name |
krumsiek11.h5ad name |
Test-5 |
input: krumsiek11.h5ad manipulate|function: strings_to_categoricals |
attributes: name |
krumsiek11.h5ad name |
Test-6 |
input: krumsiek11.h5ad manipulate|function: transpose |
attributes: name |
krumsiek11.h5ad name |
Test-7 |
input: krumsiek11.h5ad manipulate|function: add_annotation manipulate|var_obs: var manipulate|new_annot: var_add_annotation.tabular |
attributes: name |
krumsiek11.h5ad var_add_annotation.tabular name |
Test-8 |
input: krumsiek11.h5ad manipulate|function: add_annotation manipulate|var_obs: obs manipulate|new_annot: obs_add_annotation.tabular |
attributes: name |
krumsiek11.h5ad obs_add_annotation.tabular name |
Test-9 |
manipulate|var_obs: var manipulate|filter|index|text: Gata2,EKLF manipulate|filter|filter: index input: krumsiek11.h5ad manipulate|filter|index|format: text manipulate|function: filter |
attributes: name |
krumsiek11.h5ad name |
Test-10 |
manipulate|var_obs: obs manipulate|filter|key: cell_type manipulate|filter|filter: key manipulate|filter|filter_key|value: progenitor input: krumsiek11.h5ad manipulate|filter|filter_key|filter: equal manipulate|function: filter manipulate|filter|filter_key|type: text |
attributes: name |
krumsiek11.h5ad name |
Test-11 |
input: krumsiek11.h5ad manipulate|function: save_raw |
attributes: name |
krumsiek11.h5ad name |