| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.7.2+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.6+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.4.3.1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.4.3.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.4.2.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.4.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicaggregatestatistic/hicexplorer_chicaggregatestatistic/3.3.1.0 |
| hicexplorer_chicaggregatestatistic |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| hicexplorer | 3.7.2 | package |
| Additional information about this tool |
#import re
chicAggregateStatistic
--interactionFile '$interactionFile'
--outFileName aggregatedFile.hdf5
#if $targetFormat_conditional.targetFormat_selector == 'hdf5':
--targetFile '$targetFormat_conditional.targetFileHDF'
#else:
--targetFile '$targetFormat_conditional.targetFileBED'
#end if
--threads \${GALAXY_SLOTS:-4}
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
interactionFile: cHi-C/chicViewpoint/two_matrices.hdf5 targetFormat_conditional|targetFileHDF: cHi-C/chicSignificantInteractions/targetFile_dual.hdf5 targetFormat_conditional|targetFormat_selector: hdf5 |
name: value |
cHi-C/chicViewpoint/two_matrices.hdf5 cHi-C/chicSignificantInteractions/targetFile_dual.hdf5 value |
| Test-2 |
interactionFile: cHi-C/chicViewpoint/two_matrices.hdf5 targetFormat_conditional|targetFileBED: cHi-C/target_list.bed targetFormat_conditional|targetFormat_selector: bed |
name: value |
cHi-C/chicViewpoint/two_matrices.hdf5 cHi-C/target_list.bed value |